species:   Clros
pid:       PID2217
parent:    cro-mir-7
paralog:   
locus:     CADEHS020000012.2:1157823-1157879
matures:   ['GCCGAUUAGUAGUUGGGUCGG', 'AUCCCGUCUGCUCUCCGCAC']
srr:       ERR5960111
genome:    /Users/jax/+Genomes/Fungal_genomes/Clros.GCA_902827195.2_C_rosea_IK726_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5960111.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5960111.cram CADEHS020000012.2:1157823-1157879

783 out of bounds
165 alignments
164 proper strand
163 stranded perfect matches

********************              ***********************
AUCCCGUCUGCUCUCCGCACGUUAAGCUAGUAAGGGGCCGAUUAGUAGUUGGGUCGG
..((((.(((((.((.((.(.(((......))).).)).))..))))).))))....
------------------------------------GCCGAUUAGUAGUUGGGUCGG l=21 a=81 c
AUCCCGUCUGCUCUCCGCAC------------------------------------- l=20 a=0 c*
------------------------------------GCCGAUUAGUAGUUGGGUCGG l=21 a=81 ma
AUCCCGUCUGCUCUCCGCAC------------------------------------- l=20 a=0 ma*

AUCCCGUCUGCUCUCCGCA-------------------------------------- l=19 a=1 
--CCCGUCUGCUCUCCGCA-------------------------------------- l=17 a=1 
---CCGUCUGCUCUCCGC--------------------------------------- l=15 a=1 
-------CUGCUCUCCGCACGUUAAGCUAGUAAGGGGC------------------- l=31 a=1 
------------CUCCGCACGUUAAGCU----------------------------- l=16 a=1 
--------------CCGCACGUUAAGCUAGUAAGGGGCCG----------------- l=26 a=1 
-------------------CGUUAAGCUAGUAAGGGGCCG----------------- l=21 a=1 
---------------------UUAAGCUAGUAAGGGGCCGAUUAGUAGUUGGGUCGG l=36 a=1 
----------------------UAAGCUAGUAAGGGG-------------------- l=15 a=1 
----------------------UAAGCUAGUAAGGGGC------------------- l=16 a=1 
-----------------------AAGCUAGUAAGGGGC------------------- l=15 a=1 
-----------------------AAGCUAGUAAGGGGCCGAUUAGUAGUUGGGUC-- l=32 a=1 
------------------------AGCUAGUAAGGGGCCGAUUAGUAGUUGGGUC-- l=31 a=1 
-------------------------GCUAGUAAGGGGCCGA---------------- l=16 a=3 
--------------------------CUAGUAAGGGGCCGAUUAGUAGUU------- l=24 a=1 
--------------------------CUAGUAAGGGGCCGAUUAGUAGUUGGG---- l=27 a=1 
--------------------------CUAGUAAGGGGCCGAUUAGUAGUUGGGUCGG l=31 a=3 
---------------------------UAGUAAGGGGCC------------------ l=12 a=2 
------------------------------UAAGGGGCCGAUUAGUAGUU------- l=20 a=1 
------------------------------UAAGGGGCCGAUUAGUAGUUGGGUC-- l=25 a=1 
-----------------------------------GGCCGAUUAGUAGUUGGG---- l=18 a=1 
-----------------------------------GGCCGAUUAGUAGUUGGGUC-- l=20 a=7 
-----------------------------------GGCCGAUUAGUAGUUGGGUCGG l=22 a=11 
------------------------------------GCCGAUUAGUAGUUGG----- l=16 a=3 
------------------------------------GCCGAUUAGUAGUUGGG---- l=17 a=6 
------------------------------------GCCGAUUAGUAGUUGGGU--- l=18 a=8 
------------------------------------GCCGAUUAGUAGUUGGGUC-- l=19 a=8 
------------------------------------GCCGAUUAGUAGUUGGGUCG- l=20 a=2 
------------------------------------GCCGAUUAGUAGUUGGGUCGG l=21 a=81 (c,ma)
-------------------------------------CCGAUUAGUAGUUGGG---- l=16 a=1 
-------------------------------------CCGAUUAGUAGUUGGGU--- l=17 a=5 
-------------------------------------CCGAUUAGUAGUUGGGcC-- l=18 a=1 
-------------------------------------CCGAUUAGUAGUUGGGUC-- l=18 a=1 
-------------------------------------CCGAUUAGUAGUUGGGUCGG l=20 a=3 
---------------------------------------GAUUAGUAGUUGGGU--- l=15 a=1 

mb-01011
ax-1001011
ku-11
ss-101111101110
fn-111
